rs240778864 SNP Detail

Summary

• ID
  rs240778864
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttaagtttg aagctggttt ggtctgtaca
  cggaattcca gaccagccag ggggaaacaa tgctacccaa aaaaaaaaaa AAAAAAAAAT
  CCAACTgccc ttggtccctg ttctctggag tctgaggcag ggagatcttt gagttcagga
  M
  aagccggata tacataatga gttctaggcc tacatagtga gaccctacct caaaGCAAGT
  CTTTCTggca tggagataac ggctttaatc ccagtactct ggaagcagag gcaggcagat
  ctccgagagt tcgaggccag actgatctag                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911153	CHEV_6_113573608	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240778864					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	57 bp proximal
Rr636555	regulatory region 636555	within coordinates
Tssr58233	transcription start site region 58233	374 bp upstream
Tssr58234	transcription start site region 58234	434 bp upstream
Tssr58235	transcription start site region 58235	512 bp upstream
Tssr58236	transcription start site region 58236	1053 bp upstream
Tssr62461	transcription start site region 62461	82 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	380 bp upstream