rs240777667 SNP Detail

Summary

• ID
  rs240777667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGTCTG CTGTTTGGTG
  TAGTGAGCGT CAAGGACCTT CCTGGACTAA GCCATCTCTT AGTCCCATCA AATTTCACAT
  GTAACATTTT TTTTACAGTA ACAAAATGAA CTTTATTCAT CTAGAACTAT ACTGTGACTG
  TTTACATACT TCATCTATAG ACTTTGAAAG AGCTAGCTAG CTACAATAGG TAATGAAGAA
  Y
  AAAGCAATAA AATAAGCAGT GACCATCAAC ACCAAATGTA ATGAGTTTCC ACCTAAGTGT
  GATACTAACA CAGCACATAC GTTATATAAT TAAGAGAAAA GACCAGAAAC TGATTTTGTC
  GCAATCCAGT TCCAGTGAGA GCCCCTGGAG TTCCAGTGCA CGTGTGGGTG GGACATGTGA
  CCTGAATACT TCTCTGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100058	CHEV_9_95309816	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240777667					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291450 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	1272 bp downstream
Gm35915	predicted gene, 35915	843 bp downstream
Gm37805	predicted gene, 37805	829 bp downstream
Rr684791	regulatory region 684791	1113 bp distal
Tssr86547	transcription start site region 86547	1958 bp downstream
Tssr90912	transcription start site region 90912	1618 bp upstream