rs240741513 SNP Detail

Summary

• ID
  rs240741513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104948436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGTGC ATGAAGTCCT
  CTTTCTTCTT TTTGAGACAG AGTTTTGCTA CGTAGCCCAG GTTGGCTTTT AATTTATCTC
  TTTGCTTCAG TCCCTCAAGT ACTGATCCTT ATAGGTGTAA TCTACCATGC TTGGCCTACC
  CATGACAACA ATCAGAAGTT CTGGGTATCA AGCCGGGATG CACACGCAGG CCACACCCCT
  Y
  GCCTTATGCA CACACCCACA CAGCGCCTCC TTAACTACTT TGATGATTTT GCCTGGGAAA
  TGTGTTGCTG TGCCCTGCTC CGTCTCTGAC TAACACCCCA GCTCTGCTCC TTCTGGCCCG
  CACTACACTG TGCAGCTTGC TTCTCCACAA AGCCCGTGCT CTGGAGCTGA AGTGATCCTG
  TAGGGCAACA GGCATAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320861363	CHEV_3_104844038	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240741513					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104948436 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	755 bp distal
Rr582654	regulatory region 582654	within coordinates