rs240738309 SNP Detail

Summary

• ID
  rs240738309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135298934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGAACACA CACAGACACA
  CCCATACACA TATACGTGTG TGTGCACACA CACTCAAGCA TGCCCACAAC ATGTTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACTCACAGGC AACCTCAGAC TCCCCAGTTC TCAGAGTGGC TGAGCCCCCA
  K
  GTCAATCACT GTAATCTCCA ATGGTAGCTT CAAAGTTGAC CTGCATTACT CAGCAGGCAC
  AGGCTTTCCT GAACGGAGAA GCCTCTTCTG TCAGCCCATC CGACTTCCAA CCCAAACCAT
  TCAGGACACT AGCAGAAAAC CTGTTCCGTA AGCCAGCTTC TCCATAGCCC CTGAGGAGAA
  ACCTGAAAAG ATTCTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363369598	MGP_WTSI_4_135127538	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240738309					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363369598	MGP_WTSI_4_135127538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135298934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15075	CpG island 15075	1029 bp distal
Cpgi15076	CpG island 15076	1601 bp proximal
Gm30888	predicted gene, 30888	1971 bp upstream
Grhl3	grainyhead like transcription factor 3	Intron
Rr367747	regulatory region 367747	586 bp downstream
Rr398595	regulatory region 398595	1147 bp downstream
Rr602070	regulatory region 602070	91 bp distal
Rr602071	regulatory region 602071	1481 bp proximal
Rr602072	regulatory region 602072	1997 bp proximal
Tssr43996	transcription start site region 43996	1909 bp downstream
Tssr43997	transcription start site region 43997	2000 bp downstream