rs240670161 SNP Detail

Summary

• ID
  rs240670161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAAAGCA GTGAGTTCTG
  CTAGGAAGTC AGTGAGCTGA GTTCAAGATT AGCATGGTAT TTAGTGTGAG CTCAGGACTC
  CAACAACCCA TCTTTATCCT ACTTCCTGGG GTCTCCTGAG CACTGTCCAG GCTATAGTTG
  CTTTTCTGCA GATAAGTTTC CAGAAGTTAT TCTATCATGT TTGCTTTCCT TTACTTAATT
  W
  AGAACTTGTT TAGTTTTGTT TATACAGGTT ATTTGTTTAT ACAGATAATG AATATAGTTG
  CTAGCTCCAA GAAAAACACA CCCCACTTCC TTCAAACCAA AATAAAGAAA ATAACCCCCA
  CAAAACAAAA ACCAATTATT TCACTAAGCC CATGCTTTTA CTTTTAATAA ATATAAAAAA
  ATTTGAATCT AAAACTAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766349	CHEV_3_52788938	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240670161					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892437 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	517 bp upstream
Rr576615	regulatory region 576615	705 bp distal
Rr576616	regulatory region 576616	415 bp proximal