rs240648190 SNP Detail

Summary

• ID
  rs240648190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132482554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCGTTG TGTCCCTCAA
  GCTTCTTGTG AAATGAATAT GGTGGTAACA GTACCCAGTC TCCTGGGAAC ATCCAGGTGT
  GGTGTGGGCC GGTGGTGCTG GCTACTAAGG AGGTTCTTGG AGGCTCACTT GAGCTCAGAG
  GTTCAAGGTA AACCTGAGCA ACACAGGGAG CTCCCTGAGA TTCAATAACC TGCACAGCCA
  R
  GTGGCCCAGC AGTGAAGGAA CTGCCACCAA GTCTGATGAC CTGAGTTTCA TCCCTAGGAC
  CCATGAGTCA CGCACGAGGT GGAAGGAGAG AACTATCTCC TCCAAGCAAG TTCTCCTCTG
  ATCTCCGCAC AGTGTGTGTG TAGGCATGAT ATATATGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTAT ATATATATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363301254	MGP_WTSI_4_132311158	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240648190					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363301254	MGP_WTSI_4_132311158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132482554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	1660 bp proximal
Rr601060	regulatory region 601060	1940 bp distal
Rr601061	regulatory region 601061	688 bp distal
Rr601062	regulatory region 601062	489 bp distal
Rr601063	regulatory region 601063	1294 bp proximal
Rr601064	regulatory region 601064	1999 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1861 bp downstream
Tssr43703	transcription start site region 43703	1864 bp downstream
Tssr43704	transcription start site region 43704	1919 bp downstream
Tssr43705	transcription start site region 43705	1986 bp downstream