rs240556859 SNP Detail

Summary

• ID
  rs240556859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32789926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTTT GGATTATATG
  CTAAATAATA ACACTGTATT CCACAGTGTG ACCACAGGGT CATACTTAGT AAGGCAATGT
  CCTTGGGTCT ATGATTGAAT TTTGACCTCT GTCCAACAGT GCAGAAAAAG AGCATAAATC
  CAGGGATCTT GAAAAATGTG ACAACTGTCA ATGACTGGCT ACTATGGGTT AAGGGTATAT
  K
  TTGACTATTA CTCTAATAAT GTTTCTGTTG TCCTGGGGAA ATGATGGAAA ATCAAGTGTA
  TACCTGCAAC ATTAAAAAAG AAACGGCAAT GTGTTCTATG AATGCATAAC TGGTTTTACT
  GTCTTCAAAA TATTTTGCCT CTTTTCTGAG TGATAGGTAT TCATTTTTTA CAAAACACAC
  ACACACACAC ACACACACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357472273	MGP_WTSI_3_32634699	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240556859					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357472273	MGP_WTSI_3_32634699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32789926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	473 bp proximal
Gm9859	predicted gene 9859	324 bp downstream
Mrpl47	mitochondrial ribosomal protein L47	Intron
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	1280 bp upstream
Rr367422	regulatory region 367422	1009 bp upstream
Rr575021	regulatory region 575021	723 bp proximal
Rr575022	regulatory region 575022	1360 bp proximal
Rr575023	regulatory region 575023	1422 bp proximal
Tssr28770	transcription start site region 28770	1268 bp upstream
Tssr32937	transcription start site region 32937	966 bp downstream
Tssr32938	transcription start site region 32938	1002 bp downstream