rs240527787 SNP Detail

Summary

• ID
  rs240527787
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138610628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCTCTCT CTCTCCAGTC TTATCCAAGA CTGTCATGGT
  TCTCTCTGGA AGGAACATTT CTGGCCAGAT GGCTTACTAT GAGAAACAAA CAAAAAAAAA
  W
  GCAAACCTAA ATATATGTTC CTGTTGTCAT CAGACCTCAA AACGCCCCCA CTGGCAAGGA
  CTAATTTAGA TGGGAAAGCA AACCCATCTT GTCCACCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321377806	CHEV_4_138439232	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240527787					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138610628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15156	CpG island 15156	837 bp distal
Pla2g2e	phospholipase A2, group IIE	503 bp downstream
Rr603039	regulatory region 603039	851 bp proximal
Rr603040	regulatory region 603040	1165 bp proximal