rs240523363 SNP Detail

Summary

• ID
  rs240523363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135747560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCTGG GAAATGAAAA
  GCCAAATTAG GGCTGTCAGA GGTAGAGGCC TTGCCTACTA GTGTTAGCAT ATGAGTCCCT
  GCCAATAACA CCAAACACAA CAACAACAAA AACCACCAAA CACCCTTTTA AATAATTATT
  AGGAGTTTAA GAAAATTTAC TTAACCTTTT TCTAACTTGA CATTTCATGC ACAAATAGAC
  Y
  ATTCCAAAAT TTAAATTCTA ATGGGGGAAA AAAACCCTAC AGATATTATA TTACATGGAG
  GATTTTTATT TTTTTTAACC TGATGGCAGA AACAACAAAA TGAGGGTGGT TACTTTAAGG
  TCAGTCACAA ATCTTATAGT GTTCAGAAAG ACAATCTGGG ACTTGGAAAT AATGACCATT
  TATTAGATGC CCACAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363380787	MGP_WTSI_4_135576164	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240523363					SNP	T	T	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363380787	MGP_WTSI_4_135576164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135747560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	697 bp proximal
Eloa	elongin A	Intron
Gm24362	predicted gene, 24362	1763 bp upstream
Gm68304	predicted gene, 68304	1752 bp upstream
Rr398604	regulatory region 398604	1422 bp upstream
Rr602239	regulatory region 602239	342 bp proximal
Rr602240	regulatory region 602240	1504 bp proximal
Rr602241	regulatory region 602241	1763 bp proximal
Tssr44023	transcription start site region 44023	1380 bp downstream
Tssr44024	transcription start site region 44024	1436 bp downstream
Tssr44025	transcription start site region 44025	1473 bp downstream