rs240521759 SNP Detail

Summary

• ID
  rs240521759
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCGGTAGT GCTAGCTAGG ATGACGTGCA
  CACAGGATGG AGGAAGAGAA ACAGCAGAGA AACAGCTTCA CCCTCTGTAG ACCTCAAGTC
  CTACCAACAA ATTCAACTTA AAATTACTCC CCATCAGCTG GCAATTATAA CTTGGGTCAT
  T
  AAAACACCCT acacacacac acacacacac acacacacaA AAATTGAAAA AAATTTTTAA
  AAAAAACTTC AAAACTGAAA ACTGAACTTg ggcatgatag tgtattcttg taatcccagc
  tgtacaggag cctgaagcag gagggctgct                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389273	CHEV_4_141277382	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240521759					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1265 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	1880 bp downstream
Rr603862	regulatory region 603862	1352 bp distal
Rr603863	regulatory region 603863	62 bp distal
Rr603864	regulatory region 603864	454 bp proximal
Rr603865	regulatory region 603865	1942 bp proximal
Tssr1364	transcription start site region 1364	1972 bp downstream
Tssr44360	transcription start site region 44360	1830 bp downstream
Tssr44361	transcription start site region 44361	1934 bp downstream
Tssr44362	transcription start site region 44362	1991 bp downstream