rs240520627 SNP Detail

Summary

• ID
  rs240520627
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118826706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG GGTAACTTAC AAACTGTCTC
  C
  TGGGGAGAGA AAAGTGACAG GCTGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321926238	CHEV_6_118799763	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240520627					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118826706 () rs orientation: forward

Symbol	Name	Function Class
1700080F18Rik	RIKEN cDNA 1700080F18 gene	within coordinates
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	Intron
Rr637540	regulatory region 637540	1717 bp distal
Rr637541	regulatory region 637541	816 bp distal
Rr637542	regulatory region 637542	1440 bp proximal