rs240511623 SNP Detail

Summary

• ID
  rs240511623
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134342630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCACCGC AGTTACCAGG
  CACCGACGCC CCGCCCCCAC GGTGCCCGCC GGCCAATCGC ACGCAGCCTG CTGCCCTAAG
  CTCCGCAAGC CCTGGACACA CGGACACACA CACACACACA CGCTCTCATA GCGAACCCGA
  CACACACACA CACACATACA AACATATACA CACACACACA AACGCTCACA CAGCGAACCC
  K
  AGCGCGACCC CACGGGGCTC AGGAGGGGCC GTGGCACCCC GCGCGCCCGC GCGCGCGTCC
  CCGAGCGAGC CCTCCCAGCC AATCAGGAGC GAAGGAGCAG GGCTGCGCGG CCCCGCCGGG
  GTACGCTAAC TCGTCCGCTC GTTCACGCGC GGGGGGCTGC TCGCGCGAGA CCATCCCTCT
  CAAACACCCC CAACCCAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366807832	MGP_WTSI_5_134789646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240511623					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366807832	MGP_WTSI_5_134789646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134342630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			1026 bp upstream
Gm71761	predicted gene, 71761			1 bp upstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			993 bp upstream
Rr399401	regulatory region 399401			9 bp downstream
Rr621987	regulatory region 621987			1409 bp distal
Rr621988	regulatory region 621988			12 bp distal
Rr621989	regulatory region 621989			within coordinates
Rr621990	regulatory region 621990			896 bp proximal
Rr621991	regulatory region 621991			1037 bp proximal
Rr621992	regulatory region 621992			1947 bp proximal
Tssr1657	transcription start site region 1657			1180 bp downstream
Tssr49086	transcription start site region 49086			112 bp downstream
Tssr49087	transcription start site region 49087			80 bp downstream
Tssr49088	transcription start site region 49088			203 bp upstream
Tssr49089	transcription start site region 49089			1170 bp upstream
Tssr53628	transcription start site region 53628			1227 bp upstream
Tssr53629	transcription start site region 53629			557 bp upstream
Tssr53630	transcription start site region 53630			11 bp downstream
Tssr53631	transcription start site region 53631			630 bp downstream
Tssr53632	transcription start site region 53632			667 bp downstream
Tssr53633	transcription start site region 53633			680 bp downstream
Tssr53634	transcription start site region 53634			709 bp downstream
Tssr53635	transcription start site region 53635			738 bp downstream
Tssr53636	transcription start site region 53636			782 bp downstream
Tssr53637	transcription start site region 53637			861 bp downstream
Tssr53638	transcription start site region 53638			902 bp downstream