rs240491570 SNP Detail

Summary

• ID
  rs240491570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113052663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGTTGGA TAAGCCAGTA TAATAAATGA
  AAATGGGGCT AAAATGAGTG TTCTAAAATA CCTTTTGATA AGGCTGCAGA AGGAGCGGGA
  GAAATGGATA TGAAGTACTG GGCTCTTTAA AAATGATTAA AATTCTGCTT ACATAGTCTA
  R
  CTCGCGACAC TGTAATTTCA TACTGTAGTA AGGATCTCAA GCAGGAGAGT ATAAAACTCG
  GGTGAGCATG TCTTTAATCT ACCTCGATGG AAAATACTCC GAGGCGGATC ACAAGCAATA
  ATAACCTGTA GTTTTGCTGC ATAAAACCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909779	CHEV_6_113025696	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240491570					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113052663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	359 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	within coordinates
Rr407325	regulatory region 407325	115 bp proximal
Rr636448	regulatory region 636448	1060 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	686 bp proximal
Rr636451	regulatory region 636451	1600 bp proximal
Rr636452	regulatory region 636452	1612 bp proximal
Rr636453	regulatory region 636453	1948 bp proximal
Setd5	SET domain containing 5	1663 bp upstream
Tssr58166	transcription start site region 58166	1652 bp upstream
Tssr58167	transcription start site region 58167	1685 bp upstream
Tssr58168	transcription start site region 58168	1753 bp upstream
Tssr58169	transcription start site region 58169	1865 bp upstream
Tssr58170	transcription start site region 58170	1929 bp upstream
Tssr62428	transcription start site region 62428	615 bp downstream
Tssr62429	transcription start site region 62429	1479 bp downstream
Tssr62430	transcription start site region 62430	1535 bp downstream