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rs240491570 SNP Detail
Summary
  • ID
    rs240491570
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:113052663 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GGGGTTGGA TAAGCCAGTA TAATAAATGA
    AAATGGGGCT AAAATGAGTG TTCTAAAATA CCTTTTGATA AGGCTGCAGA AGGAGCGGGA
    GAAATGGATA TGAAGTACTG GGCTCTTTAA AAATGATTAA AATTCTGCTT ACATAGTCTA
    R
    CTCGCGACAC TGTAATTTCA TACTGTAGTA AGGATCTCAA GCAGGAGAGT ATAAAACTCG
    GGTGAGCATG TCTTTAATCT ACCTCGATGG AAAATACTCC GAGGCGGATC ACAAGCAATA
    ATAACCTGTA GTTTTGCTGC ATAAAACCCC                                 
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321909779 CHEV_6_113025696 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs240491570 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:113052663 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17829 CpG island 17829 359 bp proximal
Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano within coordinates
Rr379953 regulatory region 379953 within coordinates
Rr407325 regulatory region 407325 115 bp proximal
Rr636448 regulatory region 636448 1060 bp distal
Rr636449 regulatory region 636449 within coordinates
Rr636450 regulatory region 636450 686 bp proximal
Rr636451 regulatory region 636451 1600 bp proximal
Rr636452 regulatory region 636452 1612 bp proximal
Rr636453 regulatory region 636453 1948 bp proximal
Setd5 SET domain containing 5 1663 bp upstream
Tssr58166 transcription start site region 58166 1652 bp upstream
Tssr58167 transcription start site region 58167 1685 bp upstream
Tssr58168 transcription start site region 58168 1753 bp upstream
Tssr58169 transcription start site region 58169 1865 bp upstream
Tssr58170 transcription start site region 58170 1929 bp upstream
Tssr62428 transcription start site region 62428 615 bp downstream
Tssr62429 transcription start site region 62429 1479 bp downstream
Tssr62430 transcription start site region 62430 1535 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory