GGGGTTGGA TAAGCCAGTA TAATAAATGA AAATGGGGCT AAAATGAGTG TTCTAAAATA CCTTTTGATA AGGCTGCAGA AGGAGCGGGA GAAATGGATA TGAAGTACTG GGCTCTTTAA AAATGATTAA AATTCTGCTT ACATAGTCTA R CTCGCGACAC TGTAATTTCA TACTGTAGTA AGGATCTCAA GCAGGAGAGT ATAAAACTCG GGTGAGCATG TCTTTAATCT ACCTCGATGG AAAATACTCC GAGGCGGATC ACAAGCAATA ATAACCTGTA GTTTTGCTGC ATAAAACCCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss321909779 | CHEV_6_113025696 | CHEVERUD | SCREENING_POP | f | SNP | G | A |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
||||
rs240491570 | SNP | G | A |
Location: Chr6:113052663 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi17829 | CpG island 17829 | 359 bp proximal | ||||||
Gt(ROSA)26Sor | gene trap ROSA 26, Philippe Soriano | within coordinates | ||||||
Rr379953 | regulatory region 379953 | within coordinates | ||||||
Rr407325 | regulatory region 407325 | 115 bp proximal | ||||||
Rr636448 | regulatory region 636448 | 1060 bp distal | ||||||
Rr636449 | regulatory region 636449 | within coordinates | ||||||
Rr636450 | regulatory region 636450 | 686 bp proximal | ||||||
Rr636451 | regulatory region 636451 | 1600 bp proximal | ||||||
Rr636452 | regulatory region 636452 | 1612 bp proximal | ||||||
Rr636453 | regulatory region 636453 | 1948 bp proximal | ||||||
Setd5 | SET domain containing 5 | 1663 bp upstream | ||||||
Tssr58166 | transcription start site region 58166 | 1652 bp upstream | ||||||
Tssr58167 | transcription start site region 58167 | 1685 bp upstream | ||||||
Tssr58168 | transcription start site region 58168 | 1753 bp upstream | ||||||
Tssr58169 | transcription start site region 58169 | 1865 bp upstream | ||||||
Tssr58170 | transcription start site region 58170 | 1929 bp upstream | ||||||
Tssr62428 | transcription start site region 62428 | 615 bp downstream | ||||||
Tssr62429 | transcription start site region 62429 | 1479 bp downstream | ||||||
Tssr62430 | transcription start site region 62430 | 1535 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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