rs240487777 SNP Detail

Summary

• ID
  rs240487777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77647052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG CGGCAGCCCG GGGCGGTGGC
  R
  CCGGCGACAG CTCTGCGCCG CGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss639631688	FVB_NJ_2_77654765	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	G	G	A	G	A	G	A	A	A	G	A	A	A	G	A	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240487777					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	G	G	A	G	A	G	A	A	A	G	A	A	A	G	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639631688	FVB_NJ_2_77654765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77647052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11837	CpG island 11837			within coordinates
Rr559844	regulatory region 559844			within coordinates
Rr559845	regulatory region 559845			98 bp proximal
Rr559846	regulatory region 559846			280 bp proximal
Rr559847	regulatory region 559847			349 bp proximal
Tssr24865	transcription start site region 24865			80 bp upstream
Tssr24866	transcription start site region 24866			17 bp upstream
Tssr24867	transcription start site region 24867			2 bp downstream
Tssr24868	transcription start site region 24868			28 bp downstream
Tssr24869	transcription start site region 24869			50 bp downstream
Tssr24870	transcription start site region 24870			171 bp downstream
Tssr24871	transcription start site region 24871			717 bp downstream
Tssr24872	transcription start site region 24872			783 bp downstream
Tssr24873	transcription start site region 24873			960 bp downstream
Zfp385b	zinc finger protein 385B			Intron
				mRNA-UTR