rs240441072 SNP Detail

Summary

• ID
  rs240441072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109139079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCATGCTG GCTAGACAGG CCCTGTACCG ACTGAGCCAT
  ATCCCCAGCA AAAGTGATTC TATATATACT GTATGTGTGT GTGTGTGTGT ATTATAGTGC
  R
  CACACACACA CACACACACA CACACACACA CAGAGGCATC CCACAGGTAA GACAGCCTTT
  AGGAATAACC TCATAAACTT TACATTTCCA AATTTATTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321253765	CHEV_4_108954487	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240441072					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109139079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	536 bp distal
Eps15	epidermal growth factor receptor pathway substrate 15	Intron
Gm40225	predicted gene, 40225	1640 bp upstream
Rr398389	regulatory region 398389	1572 bp downstream
Rr597299	regulatory region 597299	1751 bp distal
Rr597300	regulatory region 597300	1460 bp distal
Rr597301	regulatory region 597301	1113 bp distal
Rr597302	regulatory region 597302	1416 bp distal
Rr597303	regulatory region 597303	612 bp distal
Tssr38334	transcription start site region 38334	1567 bp downstream
Tssr38335	transcription start site region 38335	1556 bp downstream
Tssr38336	transcription start site region 38336	1482 bp downstream