rs240426173 SNP Detail

Summary

• ID
  rs240426173
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152424188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCTCAG GGGTTACCTT
  GCAGGATTTT TCAGTTAACT GCGCCCGTCC TGGCAGGGCC TCACCCTGTC ACCTGCCCTC
  CCTCCCTTCT GAGGGGTATC ACTTCTTAGC TTCCCAAGTC CATGGCTCCT CCTGGACTTC
  TGAGGGACTT GTGAGAGGCC AGAAGGGCCT CCTTCTCCCA GGAATCTACA TCCCTGAGGA
  T
  GAGGCTATTT CACACACTCG CACCCAGGAG AGAGCAGCAT CTCCCAGCCT AGCATCTCAC
  CAGGGGCCAC ACCCCCTGCC CTCAGGCACC TCTTGTGCTG GCCAGCTTGT TTGTTTAGTG
  GATTTAACGC TGTCGCAGGA GCCTGCTGCT CAAACCCTCC CCTTTCATCC AGGCCTTCCA
  CGGGGTGAGG TGTGCAGGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434231	CHEV_4_151713840	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240426173					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152424188 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Intron
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	834 bp distal
Rr605853	regulatory region 605853	within coordinates
Rr605854	regulatory region 605854	1233 bp proximal
Tssr40549	transcription start site region 40549	1022 bp downstream
Tssr40550	transcription start site region 40550	969 bp downstream
Tssr40551	transcription start site region 40551	886 bp downstream
Tssr40552	transcription start site region 40552	764 bp downstream
Tssr40553	transcription start site region 40553	733 bp downstream
Tssr40554	transcription start site region 40554	1817 bp upstream
Tssr40555	transcription start site region 40555	1823 bp upstream