rs240400099 SNP Detail

Summary

• ID
  rs240400099
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129188446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acccagctG AAGGGACATA TTTTAGCTCA
  AGGGAAGTCT GATGTCCTTC ttttctcctt ctgagacagg gtctctctgt gtagccctgg
  ctgtcctgga actcactctg tagaccaggc tgaactcaga cttccagatc cacctgcctc
  W
  gtttcctgag tgttgggact agaggtgggg cataccacac ccagATAGGT CTAATAATGT
  CTTTGGGGCT AGGGGTTACT TACCATCCAG TACTACAGAA AAACCTGTTC TTTGGGCCCA
  TTCATTCtat tattattatc attattaatt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311704	CHEV_4_128971897	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240400099					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129188446 () rs orientation: forward

Symbol	Name	Function Class
Rr600195	regulatory region 600195	571 bp proximal
Rr600196	regulatory region 600196	1252 bp proximal
Sync	syncoilin	Intron