rs240397830 SNP Detail

Summary

• ID
  rs240397830
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137393747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAACATA CCTGGCTACA
  GTCAGAAGTC TCCGGATCCA GAGTGGAGAT GTTGCCAGGT GGAGGGTTCG CCCTAGACTC
  CTGGACTTTT CCTACCTGTG TGTGAGGGAG GTGACTTGCC TCTGAATGGA AAAGGTCTTC
  CCGTTGGCTT TTATGTCCCC TACCCAGGCT TCTTGCCAGC TCATTACTTC ATTTGAGAAA
  G
  AAAAAAAAAA AAAAAAGCCT ATCCTCCCCT TCTCCCCAAG ATAGTTGCCT GGCATGCTCT
  CAGGAGCCCT CTTTGCCTTG CTAACCATTA TCCAGCGCAG TTGACAGAAG GGTCCTTTCT
  CTGGGCTGTT GGGGTGCAAC AGGGCTCCTC TTTATCTTGA AGTGCTTTTC TCCTGGGACC
  TCAGGGAACG TGTCCCAGCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	DBA/1J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	QSi5/Ianm	RIIIS/J
ss363420873	MGP_WTSI_4_137222351	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	DBA/1J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	QSi5/Ianm	RIIIS/J
rs240397830					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363420873	MGP_WTSI_4_137222351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137393747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15133	CpG island 15133			1004 bp distal
Gm54263	predicted gene, 54263			1630 bp upstream
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602670	regulatory region 602670			848 bp distal
Rr602671	regulatory region 602671			1124 bp proximal
Rr602672	regulatory region 602672			2000 bp proximal
Tssr39770	transcription start site region 39770			1649 bp downstream
Tssr44130	transcription start site region 44130			77 bp upstream