rs240380044 SNP Detail

Summary

• ID
  rs240380044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135664830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAATTGTC TACATGTCCT
  CCCATGAAGG CTAGTGTCTC ACTAAGCATT ACCTGTCACT AGCCCCTAAG TTCATTAATG
  TCACGCGTTA GCACAGTTTT GTCAAGAGAC AAATTATCTG CCTTGTGTCT TATTATTTTG
  AAGGTTTGGA TAGATAAACT AGTCAGTAGT TGCTGTTCTC GCACCTAGAA TAAATTCTCC
  R
  TGCCCAGTTT GTGACCTGTA CTTACCAGAT AATAGTGTCA CAGTTACCAG ATAATAGTGT
  CACAGCTAAC CTGGAAGGAA TGTTGTCCGC GATCGTAAAT TTGTTCCACG CTTGCTTTTT
  TCTTCTAGTA CAATTAGCCC ATGACACATG AAGATTTACC GAGCTCTAAG TGCAGCTTTT
  ATTCTATAGA GGACTTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353513	CHEV_4_135493434	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240380044					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135664830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fuca1	fucosidase, alpha-L- 1, tissue			Intron
				Noncoding-Transcript-Variant
Rr602205	regulatory region 602205			1596 bp proximal
Rr602206	regulatory region 602206			1630 bp proximal