rs240308825 SNP Detail

Summary

• ID
  rs240308825
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138667682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCCT CTCTCCTCTC TCTCCTCTCT CTCCTCTCTC TCCTCTCTCT
  CCTCTCTCTC CTCTCTCTCC TCTCTCTCTC CTCTCTCTCT CTCTCTCTCT TGGTTTTTTT
  GAGACAGGAT TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG
  A
  CCTTGAACTC AGAAAGCTGC CTGCTTCTGC CTCCCAAGTG CTAGGATTAA AGGAGTGCCT
  CACCACTGTT TAGCAAGTCT TCCTCTCTTT AACTTGTTTG CCTTGGGTAT TTTATCAGAG
  CCGCTGAAAG CTAACTCAGG GATTCCATTT AAAGGGGGCC AAGGAGATTC CTCAACCAAA
  AAGTTTCAGG AGACACTGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321378244	CHEV_4_138496286	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240308825					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138667682 () rs orientation: forward

Symbol	Name	Function Class
Gm33011	predicted gene, 33011	1763 bp upstream
Rr603050	regulatory region 603050	1248 bp distal
Rr603051	regulatory region 603051	1105 bp proximal
Rr603052	regulatory region 603052	1591 bp proximal
Tssr44194	transcription start site region 44194	1740 bp upstream