rs240290830 SNP Detail

Summary

• ID
  rs240290830
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105706981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCACAT AAACCAGGGA
  AGTCTATACT GATCCAAGCA CTCTGGAGGT CGAGGCAAGA GAGTTGGTGG TTCAAGGTCT
  TCCTCAGTGA CACCACTGAG CCACAGGAGA TTGGGGGGAG GGGAGAGAGG TTCCTGAGAA
  CTTTTCCTCA TAAAACTGAA ATCAATTTTA AACCTTGTTC CAAAATCCTC AGAATTTAGG
  A
  TGAAAGCACG ATCACACCTG AGGCCACAAA AAGTGTGCAC TTTTGCAAAG TTTTAATATG
  AAACTGAATA ACATCGAGAT CTCTGTTCAC TTTTAAGATC GGTGTCTATG GGTGGCTTTA
  GAGGAGACCA GAAGCTGAAT ACAACATTCT GGGGATAAAT GTCTGTTTTG TTTTTCCTGG
  GCAAAGGAAG AGTTCATATG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863206	CHEV_3_105602583	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240290830					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105706981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13662	CpG island 13662			951 bp proximal
Rap1a	RAS-related protein 1a			Intron
				Noncoding-Transcript-Variant
Rr582779	regulatory region 582779			488 bp distal
Rr582780	regulatory region 582780			7 bp distal
Rr582781	regulatory region 582781			683 bp proximal
Rr582782	regulatory region 582782			1184 bp proximal
Rr582783	regulatory region 582783			1610 bp proximal
Tssr34930	transcription start site region 34930			1010 bp downstream
Tssr34931	transcription start site region 34931			1634 bp downstream
Tssr34932	transcription start site region 34932			1658 bp downstream