rs240258917 SNP Detail

Summary

• ID
  rs240258917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84564631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGGGCT CAGAGACAGA
  GGTGAAAACT AAGCGAAGCC CTCCAGACTC GCTCCCCAGC GCTCTCCGCA CACCCCTGCT
  TGGACGCCTG CAGCCCGGAG CATCACACTC GGGAGCCCTC TCTGCTACCT ACCCTGGTCA
  ATATCCCTCT TACTAGCTCA CCCGGCCTCG TTAACTAGCT CACAGGGCGC CGGAGGTCTC
  Y
  GAGCCGCGCT GCAGGCGAGC TGGGGAAACC CAGGCGGCGC CGGCTGAGGC AAGGAAGGGG
  CGGGGCGGGG ACCGGTGCTT CCGAGTGTCC GAGCTCTCGG CGCCCCCTGG CCGGACACCC
  GCGGCTAGCG GACTCCTCGA GAGAGCGCTT ACCTGTAGCA ACCAGTGACC AGTCTCTCCG
  ATGAGCGGGA ATCCCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369055484	MGP_WTSI_6_84537643	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240258917					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369055484	MGP_WTSI_6_84537643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84564631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17626	CpG island 17626			1602 bp distal
Cpgi17627	CpG island 17627			811 bp distal
Cpgi17628	CpG island 17628			within coordinates
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Rr633074	regulatory region 633074			21 bp proximal
Rr633075	regulatory region 633075			979 bp proximal
Tssr61720	transcription start site region 61720			565 bp upstream
Tssr61721	transcription start site region 61721			within coordinates
Tssr61722	transcription start site region 61722			288 bp downstream
Tssr61723	transcription start site region 61723			342 bp downstream
Tssr61724	transcription start site region 61724			647 bp downstream
Tssr61725	transcription start site region 61725			951 bp downstream
Tssr61726	transcription start site region 61726			982 bp downstream
Tssr61727	transcription start site region 61727			1002 bp downstream
Tssr61728	transcription start site region 61728			1046 bp downstream
Tssr61729	transcription start site region 61729			1314 bp downstream