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rs240241330 SNP Detail
Summary
  • ID
    rs240241330
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:54505825 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCTACACCA TGTATCTATT
    GATGAGTGGC TGATTGCCAC GCTACTTGGC AACTTCAAAC AAGTAGCCTT GCTTCATCTC
    TGTCCTTTGG GTGTAAGGGC TATGGGTACA GCTGCGGTTC ACTGTATTAC AGTTCCTCAC
    AAGATCACTC TCAAGGCTGG CTGATCTTGC CAGCTGAGGC TGCAACCGCT TCAGGGATAC
    R
    CTAGAGGAAT AGCTAGTTCC AAAGGCAATC CCTGGATACT GTCAATCCTT GGAAGATCCT
    GCTGGGAGAG GCAACAGCTC CTGGCCTCAC ATGACTACAG CTGGCTCTGC CAGGCATAAT
    GGGAGAGAAC AGAGGATGCC CTGGGCACAA AGAGGCTTCA GCAACCACAA TAGCTTTGTC
    ACGCTATATT TATTAGTTAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320772143 CHEV_3_54402326 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs240241330 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:54505825 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40050 predicted gene, 40050 within coordinates
Rr576818 regulatory region 576818 260 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory