rs240216102 SNP Detail

Summary

• ID
  rs240216102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76868673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCAGACT TCTGCAGGCC
  AGCAGGGGTC AGGGGCGGAC CCGGGGAGGG GCCTTGCTTG GTCTTAGGCC GGGCGGTCAC
  CTCTGTGCTC GATCAGATCA AGCAATCTGC TGTGAGCTGA GACCCGGTCA AGCGCTGGAC
  GGGTAGGGGG CTCGTAAAGG GGCTCAGGCG GGCTGCGGGG CCCAGGGGTT GGGTGAAGAG
  R
  AGACGGGATG GAAGGGGGCG GGGAAGAAGG GACTTATTGG AGAGGCGGAC AGAGAGGGTC
  GGCTTGAGGA GGAAGCACAG GAGCCCGAAC ACTGGGCGAG CGTACTGAAG GGGGCCTGGA
  GTCTAGAGAT GTAGGTTCTT AGGGCACAGG CTAGCAGACG CGCCACCGGT CGTCCGCTCC
  TCAGGGAACC ACAAGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958654	MGP_WTSI_10_76495584	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240216102					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958654	MGP_WTSI_10_76495584	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76868673 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			within coordinates
Rr434376	regulatory region 434376			145 bp distal
Rr434377	regulatory region 434377			165 bp distal
Rr434378	regulatory region 434378			within coordinates
Rr434379	regulatory region 434379			157 bp proximal
Rr434380	regulatory region 434380			304 bp proximal
Rr434381	regulatory region 434381			440 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			584 bp downstream
Tssr94204	transcription start site region 94204			562 bp downstream
Tssr94205	transcription start site region 94205			92 bp downstream
Tssr94206	transcription start site region 94206			401 bp upstream
Tssr94207	transcription start site region 94207			421 bp upstream
Tssr94208	transcription start site region 94208			451 bp upstream
Tssr94209	transcription start site region 94209			465 bp upstream