rs240169069 SNP Detail

Summary

• ID
  rs240169069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:32539870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCAGCG TTCGCTTTAG
  CCCCGCCCCT GGAGCCGCCA TTTTGTGGCG TCTTCGGAAG AGAAGGCGGG ACTGAGACCG
  CTCGGGTCCT GGGGTCCCGC AGCGATGAGA GCCACTCGGC TTGCACAGTG AAAGCGGTCC
  AGAACGCATC CAGAAACCGG CCACAGCGTC GGCCTTCGCG CCTCATCCGC ACCCCCCGCC
  Y
  CGAGTCCTAC CGGCCAATCC ACGCGCGGCG CTTCGGGAAC GATTGCGCAG AGGCCCAATA
  AGGGAAGCGC GCGCGTCCGG GACAACTCCA CACAGAACCG GGCTGCGGCA AGTGCGTTCC
  GGCTGCAGGC TAAGCCCGAA TACCACATGC GCCAGGGTCT CCCGTGGTGA AGAAGAGCCC
  ACACTAACCT CCGTAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398030317	MGP_WTSI_17_32457841	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240169069					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398030317	MGP_WTSI_17_32457841	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32539870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akap8	A kinase anchor protein 8			Intron
				Noncoding-Transcript-Variant
Akap8l	A kinase anchor protein 8-like			528 bp downstream
Gm65253	predicted gene, 65253			within coordinates
Rr405177	regulatory region 405177			34 bp downstream
Rr405178	regulatory region 405178			258 bp upstream
Rr525728	regulatory region 525728			1239 bp distal
Rr525729	regulatory region 525729			152 bp distal
Rr525730	regulatory region 525730			within coordinates
Rr525731	regulatory region 525731			279 bp proximal
Tssr143711	transcription start site region 143711			480 bp upstream
Tssr147366	transcription start site region 147366			1883 bp upstream
Tssr147367	transcription start site region 147367			214 bp upstream
Tssr147368	transcription start site region 147368			206 bp downstream
Tssr147369	transcription start site region 147369			222 bp downstream