rs240150668 SNP Detail

Summary

• ID
  rs240150668
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGAGCA TGGGTAAGAC
  ATATGCACTC CTTACTGGTT CTGTTCACTG TGTACTCAAA AATGGCCAGC TCTAATTAAG
  ATGACTTCAG TTCCCAGTTC CTGCCACAAG ACCCATAAAA GCCCATGGCA GGGCAACATG
  GGGTTTCCAT CTGTGGAGCC CCTCTCATTT TCACTCTTGG GATTCTGGGT TGTTTTTTTT
  G
  TTGTTGTTGT TGTTGTTAAT TAATTAATTA ATTATAATAA TAATAATTAT TATTCTTTAA
  TTCTTTTTAC ATCCAGTCAT TATCCCCCTC CCAGTCCACC CTCTGACTGT TCCTCATTCC
  ATTCCTCTCC CGCTCTCCTC CTCCTATGCC CCCCCATCTC CAAGAGGATG TCCCTACCCC
  ACCCCACCCC ATCCCACCAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	RF/J	SJL/J	SM/J	ST/bJ
ss352044669	MGP_WTSI_1_158679960	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	RF/J	SJL/J	SM/J	ST/bJ
rs240150668					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352044669	MGP_WTSI_1_158679960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1147 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	864 bp distal
Rr421243	regulatory region 421243	62 bp distal
Rr421244	regulatory region 421244	77 bp proximal
Rr421245	regulatory region 421245	1929 bp proximal