rs240147991 SNP Detail

Summary

• ID
  rs240147991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110250111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTAAAG AGACAGAGTG
  TACTTCCACC CAGGAGAGAC AGCCTAAAGA CTGCGACTTC CTGGAGGATG GGGTGAGTCA
  CCTTCTTCCA GATCCTAGAC TGCCTCCTGG AGGAAGAGAA GTCCCCTCCT CTCTTGCCTT
  CTTTCATGTC ACCTGACCAC TTCACCAGCA GTTGTAATGT TGAAGCCTTT TTCAAAATCA
  R
  ATTTTTGGGC CCTGAGATGG TTTGGTGGTT TGAAGGGACC CTGGGACCCA CATGGTGGAG
  AGATCTGACT TCCACAGCTG TTCTCTAACT TCTGTAGACA TTACTCTCAC ACAACCCAAG
  TAATCAAAGG AAAAAAAAAA AGATTCTCTT TAATACCCTT TCTTACTATA AATTATTGCA
  ATATCTCACT ACAACAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902764	MGP_WTSI_9_110323547	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240147991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902764	MGP_WTSI_9_110323547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110250111 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Intron
Tssr3020	transcription start site region 3020	154 bp downstream
Tssr3021	transcription start site region 3021	246 bp downstream
Tssr3022	transcription start site region 3022	689 bp downstream
Tssr3023	transcription start site region 3023	1325 bp downstream
Tssr3024	transcription start site region 3024	1348 bp downstream
Tssr3025	transcription start site region 3025	1427 bp downstream
Tssr3026	transcription start site region 3026	1483 bp downstream
Tssr3027	transcription start site region 3027	1566 bp downstream
Tssr3028	transcription start site region 3028	1644 bp downstream
Tssr3029	transcription start site region 3029	1659 bp downstream
Tssr3030	transcription start site region 3030	1680 bp downstream
Tssr3031	transcription start site region 3031	1853 bp downstream
Tssr87360	transcription start site region 87360	1234 bp downstream
Tssr87361	transcription start site region 87361	1181 bp downstream
Tssr87362	transcription start site region 87362	926 bp downstream
Tssr87363	transcription start site region 87363	210 bp downstream
Tssr87364	transcription start site region 87364	159 bp downstream
Tssr87365	transcription start site region 87365	125 bp downstream
Tssr87366	transcription start site region 87366	650 bp upstream
Tssr87367	transcription start site region 87367	667 bp upstream
Tssr87368	transcription start site region 87368	1223 bp upstream
Tssr87369	transcription start site region 87369	1248 bp upstream
Tssr87370	transcription start site region 87370	1281 bp upstream
Tssr87371	transcription start site region 87371	1320 bp upstream
Tssr87372	transcription start site region 87372	1376 bp upstream
Tssr87373	transcription start site region 87373	1406 bp upstream
Tssr87374	transcription start site region 87374	1447 bp upstream
Tssr87375	transcription start site region 87375	1465 bp upstream
Tssr87376	transcription start site region 87376	1487 bp upstream
Tssr87377	transcription start site region 87377	1495 bp upstream
Tssr87378	transcription start site region 87378	1545 bp upstream
Tssr87379	transcription start site region 87379	1595 bp upstream
Tssr87380	transcription start site region 87380	1808 bp upstream
Tssr91614	transcription start site region 91614	1080 bp upstream
Tssr91615	transcription start site region 91615	1046 bp upstream
Tssr91616	transcription start site region 91616	169 bp upstream
Tssr91617	transcription start site region 91617	144 bp upstream
Tssr91618	transcription start site region 91618	124 bp upstream
Tssr91619	transcription start site region 91619	1262 bp downstream
Tssr91620	transcription start site region 91620	1366 bp downstream
Tssr91621	transcription start site region 91621	1461 bp downstream
Tssr91622	transcription start site region 91622	1503 bp downstream
Tssr91623	transcription start site region 91623	1965 bp downstream