rs240051430 SNP Detail

Summary

• ID
  rs240051430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59803032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGAGACAG GGACTCACTA
  TGTAGCCCTG GCTGTCCTGG AATTCACTTA TGTAGGCCAA GCTGGTGGTG ATATCAGTGA
  GGCAGGCTAT AGCAGAGTTG GTGGTGATAT CAGTGAGGCA GGCTATAGCA GAGTTGGTGG
  TGATATCAGC GAGGCAGGCT ATAGAACAGT TGGGGACATC TCTGCTACAG GCCCCAGATG
  Y
  TCTCTGATGA CCGGTTTTTT TTTTTTTTTT TCAACTTTTG GGTCGGTGAA GCTAGTGGCT
  TGGTGAGTTA ACACATCATA AAGATTTCAT TTGATAGTGA AAAGGAAGTT AGGTCAGACA
  CAGAGATTAG TAATTTGTGA CTTTTTGTTT TTTTAAAGAG AGAAACAGGG TTTCTCTGTG
  TAGCCCTGGC TGCTCTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141405	CHEV_4_59815904	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240051430					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59803032 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	374 bp upstream
Rr593142	regulatory region 593142	within coordinates
Tssr37446	transcription start site region 37446	1971 bp upstream