rs240016117 SNP Detail

Summary

• ID
  rs240016117
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132483957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGACAGAC ACCACAGAAG
  ACAAATTGCA GAAATAAGAT TTTCTCCTTC CACCGTATGG GTTTGGGGAA CTGGACCTCT
  CGGTGGCAAT GTTTTGTGTT TCTTTTCTGG AGTCCCAGAG ATGGAACGCG CTCATTTGAA
  CAACCACTGT ACCTCAGAGC CTTCTATCTG AGTGTCCTGA TTGAGTTCGC GAATCTTCCC
  S
  ACCACCGGCT CCCTCTCAGT GTCTAGCTTT CATGTACTAG ATCCTTGTCC CCCTGGCAAA
  GTCTGTGTCC TGCCCCTGGC ACTTAAAATC CTCTTGAGCA CTTTTTGGTT TGGTTTTGCT
  TTTGGAACAA TGTTTCATGC ATCCTAGACT GCCGTTGAAC TCTGTCTCCC AACTGAGCTA
  CACACACAAA CAGCCTTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336215	CHEV_4_132312561	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240016117					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132483957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	257 bp proximal
Gm70165	predicted gene, 70165	1556 bp upstream
Rr601062	regulatory region 601062	1892 bp distal
Rr601063	regulatory region 601063	within coordinates
Rr601064	regulatory region 601064	596 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	458 bp downstream
Tssr43703	transcription start site region 43703	461 bp downstream
Tssr43704	transcription start site region 43704	516 bp downstream
Tssr43705	transcription start site region 43705	583 bp downstream
Tssr43706	transcription start site region 43706	602 bp downstream