rs239997940 SNP Detail

Summary

• ID
  rs239997940
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156445429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAATTTT ACACAGGATT GTCCTGTGGA
  CTCCGTTCTT TGTACGTTTT GACACCTTGA CTTTGGTAGC CCTCTTTTGG ACCTGAAGTC
  CCTCCCTAGA GCAGATGGAC CATGTCTAGA TATCTCCCTG TATATTGACA GTTGTCAGTG
  S
  GGAACTTTGG TTCATCACAT TTAAAGAGAC ATGCAGTGTA AACCGAGCTA TGTGTGGCCC
  CAGGGGGCTT GCTGCTCATC TCTAATAGTG CCTGCTGTGA GTTTGCAAGC CACACATTAT
  CCTTCAGCAA ACCTTTTGTT GTGTGCTGGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072534	CHEV_1_158547990	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239997940					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156445429 () rs orientation: forward

Symbol	Name	Function Class
Abl2	ABL proto-oncogene 2, non-receptor tyrosine kinase	Intron
Rr396425	regulatory region 396425	1951 bp downstream
Rr421203	regulatory region 421203	1446 bp distal
Rr421205	regulatory region 421205	310 bp distal
Tssr9572	transcription start site region 9572	1997 bp downstream
Tssr9573	transcription start site region 9573	1973 bp downstream
Tssr9574	transcription start site region 9574	1926 bp downstream