rs239956611 SNP Detail

Summary

• ID
  rs239956611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88740891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCAAGA TCAGGCCAGC
  TGTGACCAAA AGAGCGCTTT TGGTTTCTTA ATGTGACCCC CCCCCCTCCC CAATGACAGA
  GAAGAGAAGT TGTGATTTTT CAAAAAGACA GTCTCTCTCA ACCAGGCTGC TCTGCAACTC
  ATTTGTTTAG CCAGCCTATA CTGGACTGGA AATCTCCTAT TGATAGGATT ACAATCTCCT
  R
  TTGAGCCACC ACAGCCTGTC AAGAGTAATT TTAATTACAT TTATTGACAG GGTCTTGGGT
  AATACAGACT GACCTTGAAC TTACTGTGTA GTCCAGGCTG GTCTTGAACT CCTTTCAACA
  CCTGCCAAAT GCTAGTGTTA CAGTCATAGA CCACTCTGCC TAAAAAGTGT ATTTTTTAAG
  TTAGAGAAAC TACTAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358802529	MGP_WTSI_3_88637506	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239956611					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358802529	MGP_WTSI_3_88637506	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88740891 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	1037 bp upstream
Gm64348	predicted gene, 64348	95 bp downstream
Gon4l	gon-4 like	1640 bp upstream
Rr375322	regulatory region 375322	1492 bp downstream
Rr375323	regulatory region 375323	1370 bp upstream
Rr397779	regulatory region 397779	780 bp downstream
Rr579902	regulatory region 579902	1109 bp distal
Rr579903	regulatory region 579903	1990 bp distal
Rr579904	regulatory region 579904	445 bp distal
Rr579905	regulatory region 579905	992 bp proximal
Rr579906	regulatory region 579906	1131 bp proximal
Rr579907	regulatory region 579907	1557 bp proximal
Rr579908	regulatory region 579908	1573 bp proximal
Rr579909	regulatory region 579909	1658 bp proximal
Tssr34067	transcription start site region 34067	1013 bp upstream