rs239922527 SNP Detail

Summary

• ID
  rs239922527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78875487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTCTAA AACTACTGAA
  ATACCAGGAG AAGAACTAGA TCTTAGCTTC TTCTAACAAT GTGTCATACT ACAAAGTGAA
  TTTCAAATGG TTAGTCATTC AAAAGGGGGT GGTAAAAAGT GAAATATCAA ATAAGAAGTC
  ACCTAAAACA AACTTCAAAC TTGTTACTTT GCTTGTGGAT TGTCTCCAGA TCATGGAGAA
  R
  TATTCCACAC ATTGACAAAT CACTTGTCGC TACTGTCTAC AAATCTCAAA TATTAATTGA
  AAGTTTCTTC AAATCAACCA GGGTCTGATA TTTAGAGTTT CCTCCTGGGC ATATTTCTAT
  GCTTTTTGAT GTTTGGAGTG GGGTTCTTGT TAAGATGATG TAATATTGGT ATTCTGTGAA
  GTTCAAGGAT CTATACCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321832853	CHEV_6_78848498	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239922527					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78875487 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	1548 bp proximal
Rr632521	regulatory region 632521	1631 bp proximal