rs239909828 SNP Detail

Summary

• ID
  rs239909828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157148946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAGTCTTG ATGAGCAGGC TCTGATGGCT GTGTTTCTGC
  TCTTGGTTAA GAAACTTGAT GGCTTCCTTA TGGCTATGTT TAGGATACTC TGAAAGAGCC
  Y
  TGTCTGATTC TTATCTACTT GTCTGTCTCT ATCTACTGAG AGAAAAAAAA GATTACTTTG
  AATATTAAAT GTATTCTTTG ACAATTTCAT ACATGCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585485	CHEV_2_157132762	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239909828					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157148946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			within coordinates
Rr568467	regulatory region 568467			894 bp proximal