rs239907494 SNP Detail

Summary

• ID
  rs239907494
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126341069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCAGTT TGCTTGTAGC
  CACATCAGAG AGAAGGGCCG GTTTGTAGGC GTAGGCATGT GTACCCCACA TGAATCTCTC
  TATTTCCTCA TCCTTTTCTC AAAACATTTC AATCCCCAAA TAGCATTTCT CACCAGTTTC
  TTCCTCAAGC AGATTGTCAT TAACCTGAGA CCTGAAACTC TCTCATGTCT TTGTACAAAA
  M
  AGCCGAAGGA TCAAATTTTC TCCTCAAACA AACCTTAGCA CTGAAAATGT ATCCCTCGAG
  CCTCAGAAAC ACAGGCCAGT GCGAACCGTA CATCTGAAGC ATGAATTAAC CACACAATAA
  AGGAGACCCC GGGCTGTGCA GAAGAAACCT GCTACCCAAC ACTCTAAAAC CAAGGTGCCC
  TTTACTAGGC TCCCATCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355574622	MGP_WTSI_2_126324885	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239907494					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355574622	MGP_WTSI_2_126324885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126341069 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	within coordinates
Rr564347	regulatory region 564347	294 bp proximal
Rr564348	regulatory region 564348	688 bp proximal
Rr564349	regulatory region 564349	1448 bp proximal
Tssr632	transcription start site region 632	866 bp upstream
Tssr19934	transcription start site region 19934	73 bp downstream
Tssr19935	transcription start site region 19935	826 bp upstream
Tssr26038	transcription start site region 26038	975 bp upstream
Tssr26039	transcription start site region 26039	532 bp downstream
Tssr26040	transcription start site region 26040	565 bp downstream
Tssr26041	transcription start site region 26041	582 bp downstream
Tssr26042	transcription start site region 26042	627 bp downstream
Tssr26043	transcription start site region 26043	690 bp downstream
Tssr26044	transcription start site region 26044	765 bp downstream
Tssr26045	transcription start site region 26045	1143 bp downstream
Tssr26046	transcription start site region 26046	1482 bp downstream