rs239901371 SNP Detail

Summary

• ID
  rs239901371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101141012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGCTGT CTTTTATACA
  CAGACTCTGG CCAGTGGATA TGATCCCCAT CCTAGACTGT GAGGGAATAC AACATGGCCC
  ACGTTTCTAT CTGTTTGCAG CCATTGGTGG ATGCGTGGGT AGACAAAATG ATCTATACAA
  GGCAGGGAGC AACACAACCA CTTGGGGGAA CTGAGTCCTA GAACTCACAT TGCTAGGTGA
  R
  GCAACCTTTG TTCTCCAGAC TTGCCTAAGC TTGAACCTGA ACAGACAGAT TAAGGACATG
  ACGGTCACAG AACTGTTAGC TTGTCAAGGG TGGTTAAGAA GCCTTCATAA ACTTTCCAGG
  GAAATGCATG GTTAGTGCTG ATATCAGGCG TAACCAACCT AGGATAAAGC ACCTTGTTAA
  CCAGGGAGCC TAGGAAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229202	CHEV_4_100956420	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239901371					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101141012 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	393 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	within coordinates
Rr596107	regulatory region 596107	133 bp proximal
Rr596108	regulatory region 596108	304 bp proximal