rs239884219 SNP Detail

Summary

• ID
  rs239884219
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69554992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATATAT ATATCAAAAA
  TTGTATTTTT TATTTCTGTA GGCCAAAATT TGGACCTTGA GATGTGCAGG CAGTACTTCA
  AATATTCAGA GAAGACTGCT ATAATTGGAC CTTTGACTTT TACTGACAAG GCGCATTTTT
  TGCTTTGTTT GAGGTCTTTG GCATTTTTAG GGCAAGCACC ACTGAGCTGT ATTCCTAACC
  M
  TTGGTCTCCA CATTTGTTTG TGTGCATAGA TTCAAGACTT CACAACTGAG GGCAAGTGCT
  AGATCACTGG ACCACAAACT AACTCCTAAG TTTTCAGAAT ACCTGTTAGG TGGTGTTTTT
  CTACCAGCTC ATTTTTTGCA TACCAGTAGT TTGTGTATAT CAAAAACATT AAAGAAAATG
  GTTCTATTTG GAAGAGCATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377121	MGP_WTSI_2_69562705	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239884219					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377121	MGP_WTSI_2_69562705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69554992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			904 bp distal
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			1741 bp downstream
Rr558457	regulatory region 558457			1545 bp distal
Rr558458	regulatory region 558458			1854 bp distal
Rr558459	regulatory region 558459			833 bp distal
Tssr18132	transcription start site region 18132			1808 bp downstream
Tssr18133	transcription start site region 18133			1772 bp downstream
Tssr18134	transcription start site region 18134			1580 bp downstream
Tssr18135	transcription start site region 18135			1555 bp downstream
Tssr18136	transcription start site region 18136			1370 bp downstream
Tssr24445	transcription start site region 24445			1865 bp upstream