rs239874484 SNP Detail

Summary

• ID
  rs239874484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57755707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTGGTG ACGGGATGCG
  GAGGGTTTAC CCTTTGTAGT GGGAGCGGCC AGTGCGGATG GCCCACACTT GGGGAGGTGT
  CTCTTAGAAG ACCTTGGCCA GCTGCGCCTG CACGCTCCTG AAATCAGAGC AGCTCTATGC
  TCTTTGTTGC CTCCTTTGAG TACAAGGAAC TTCAGGTTCA GTGGAGCTTT TGCCCTGAAC
  Y
  CAGTGCTGCT CATCATGAGT GTGGCTCAGT CGTCCAGAAA TTCTAAACAA AACAGACCCT
  ATGTGCACCT GGTAACTGCA AAAGTTAGTG TGCGTTAAAT ACATCCATGA AATACAAAGA
  ATAATCAAGC TAGAAAAGGA GTCATTGAAC TAGACCAGTG GTTCTCAAAC TTCCTAATGT
  GACCCCGTGA TACAGTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358085465	MGP_WTSI_3_57652208	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239874484					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358085465	MGP_WTSI_3_57652208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57755707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13199	CpG island 13199	13 bp distal
Gm66316	predicted gene, 66316	within coordinates
Pfn2	profilin 2	529 bp upstream
Rr577168	regulatory region 577168	1918 bp distal
Rr577169	regulatory region 577169	247 bp distal
Rr577170	regulatory region 577170	173 bp distal
Rr577171	regulatory region 577171	within coordinates
Tssr33340	transcription start site region 33340	676 bp upstream
Tssr33341	transcription start site region 33341	566 bp upstream
Tssr33342	transcription start site region 33342	451 bp upstream
Tssr33343	transcription start site region 33343	188 bp upstream