rs239872130 SNP Detail

Summary

• ID
  rs239872130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143746266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCAAGG CCACCCTCAG
  CTACACTGTG ACTTCAGGCC AAGTTAGGTT ACAGAGGACC TTATCTTAAA AAACAAAAAA
  CAAAAACAAA AACAAAAAAT AAAAAACTAA TCAATCAAAC AACAGCTATT ATGTCTAGTG
  CCCGAGTCTT AGAGTTTATA AATGAAAATC TGTCCGTCTT CATGTGGCTA GCATAAAATA
  Y
  AAATTACTAA GACCAGGTTA AACTCTCAAT AATATTTTTT AAATATTTAT TTTAACTATT
  CTGGTGCTGA GGATTGAATC CCAGGTCTGC CTGACATGAG CTAAACGTGA CCTCTTCCAC
  TGAGTTCCAT CTCCATTCTC AATGAAGCAG CCACAGCAGC AGCACTCAAC CTGTGGGCAG
  TGACCCCTTT TGTTGCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320535026	CHEV_2_143730082	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239872130					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143746266 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	190 bp distal
Rr566333	regulatory region 566333	726 bp proximal