rs239867079 SNP Detail

Summary

• ID
  rs239867079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152101343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTGGGC AAAAGCTAAG
  AGAAAAGACG CCCTGCCTTT AAAGAGACTT CATTCTTGGC GGGTAGTGCT GTTTAAAGGT
  ACGGAAAATA AAAGCGGTGG AGAAGGTGTA CTCTGGTGGG ACTGCCGACG AGTCGCGGTG
  GAGCTGGGGA AGAGTCCTGC CCTAGGGAGG GAGGTGAGCA AAGGCTGGAG AGGTGGGCGC
  Y
  TGCGTACTGA GCGGGCGGCG GCTGGCGCGG CAGTCCGGGG CGTCGTGCGG AAAGCGCCGC
  GGGGCCAGGC AAGGTCGGGA CGCGGGCGGG GAGCCTCTCC GGGAAGGTAG AGCGGATCAC
  AGCACGCAGC GGGCTGGGCC GGTGAATCCT CCCGCCCGCC GGCCGGCCGG GTCGGGATCG
  CTGCAGCGGC CGCGGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265577	MGP_WTSI_3_152058670	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239867079					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265577	MGP_WTSI_3_152058670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152101343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	944 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm43857	predicted gene 43857	1466 bp upstream
Gm66519	predicted gene, 66519	1029 bp upstream
Rr587540	regulatory region 587540	1959 bp distal
Rr587541	regulatory region 587541	1872 bp distal
Rr587542	regulatory region 587542	223 bp distal
Rr587543	regulatory region 587543	within coordinates
Rr587544	regulatory region 587544	195 bp proximal
Rr587545	regulatory region 587545	255 bp proximal
Rr587546	regulatory region 587546	344 bp proximal
Rr587547	regulatory region 587547	488 bp proximal
Rr587548	regulatory region 587548	534 bp proximal
Rr587549	regulatory region 587549	569 bp proximal
Rr587550	regulatory region 587550	991 bp proximal
Rr587551	regulatory region 587551	999 bp proximal
Rr587552	regulatory region 587552	1991 bp proximal
Tssr32410	transcription start site region 32410	217 bp downstream
Tssr32411	transcription start site region 32411	285 bp upstream
Tssr32412	transcription start site region 32412	355 bp upstream
Tssr32413	transcription start site region 32413	656 bp upstream
Tssr32414	transcription start site region 32414	958 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	Intron