rs239847340 SNP Detail

Summary

• ID
  rs239847340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCCCT CCCTCCCTCC
  CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCGTCCCTCC
  CTCCCTCCTT CCTTCAGTTG CTTTTGCCAG GCATCCTGCT GCACCATGAG AAAGGTAAGC
  AGCACAGTGG GCCTCTCTTC AGCAAGGGCT CTGTGTGTGT GTGTGTGGGG GGGGGGGTGG
  K
  GGTGGTAAAA TGAAGGCCGA AGAGGGTTCA GGAACTTTGG CATCATGCTA AGAAGTAATA
  GTGGTGTCAG GAAGGACTCG GGAGTTGGGA GACACAAGGC AATGTGGAAG TGAAGCACCT
  TGGCAGGCTC CTTAACCAAA TTTTACAGGA CTTATAGCCC ATGTGCCCTG AATGGATGGG
  GAAGACAGGA CATACCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57L/J	KK/HlJ	RF/J	SJL/J
ss369835351	MGP_WTSI_6_118920260	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57L/J	KK/HlJ	RF/J	SJL/J
rs239847340					SNP	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369835351	MGP_WTSI_6_118920260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1580 bp proximal
Tssr62671	transcription start site region 62671			1882 bp upstream