rs239840938 SNP Detail

Summary

• ID
  rs239840938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCTGA CTCTAGTCAT
  CAGGACAACC CCACGTAGAG CATCTGTAAC TTTTGTGAAA GGAGAGTCAG GTTGAGTTGC
  CTGTGCCTGC CCTCCCCCCA ACCCCCACCT CCATGCTAGA GGGGTAAAAT CCAAGCTGAC
  AAATGCCGGA GGAAGAGCAG TCAGTGTTTG AGACTGAATC CAAACATTAT GTCAGAGCAG
  Y
  GGTTCCCAAC CTTCCTAATG CTGCGGCCCT TTAATACTGT TCTTCATGTT GTGCTGACCC
  CCAACCATAA ATTAGTTTTT GTTGCTACCT CATAACTGTA ATTTTGCTGT TAGGAGTCAT
  AATGTAAATA TCTGTGTTTT CTGATGGTCT TGGGTGACCT ATGTCAAAGG GGCTGCCACT
  CACAGGCTGC ATTAGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367845397	MGP_WTSI_6_31077424	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239840938					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367845397	MGP_WTSI_6_31077424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104359 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399601	regulatory region 399601	1878 bp downstream
Rr399602	regulatory region 399602	676 bp downstream
Rr627895	regulatory region 627895	1624 bp distal
Rr627896	regulatory region 627896	932 bp distal
Rr627897	regulatory region 627897	413 bp distal
Rr627898	regulatory region 627898	842 bp distal
Rr627899	regulatory region 627899	1637 bp proximal
Tssr55453	transcription start site region 55453	682 bp downstream
Tssr60158	transcription start site region 60158	1083 bp upstream
Tssr60159	transcription start site region 60159	921 bp upstream
Tssr60160	transcription start site region 60160	887 bp upstream
Tssr60161	transcription start site region 60161	863 bp upstream
Tssr60162	transcription start site region 60162	694 bp upstream