rs239821732 SNP Detail

Summary

• ID
  rs239821732
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57481931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTACAT TACTGTGCTG
  TGTGGTCATT ACGTCATCAG CTGGGAGAGG TAAAGCCCAC CAGGCACTGT GTTCTTTTCC
  GGTTTGCTTT TCCTGAGTGA CTGAAGAACC CAGACCACCT ACTCACCTGG CTGTGAGCTA
  GCTAACTTAA GTGAAGGCGC TAAGGGCCTA AGACCCAGAT TTAGGCCAAA GTCGCTCAAA
  M
  TTCCTTTCCC CAAGTTTAAG TTTTCCAATG GCCTGGATCT CTTAGGGCTT AAGCAGTTTC
  CACTTCATGA AACGTTCTCT GTTCTAGTCA AGTACAACTC CCAGAGATTC ATCCCCTACT
  TTTTTATCTT AGCAGATCTC TGAAGCACCT TGGAAGAGTC AGTCTCTCAG TCTCTCTCTG
  TCTCTCTCTC TCTGTCTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358079660	MGP_WTSI_3_57378432	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239821732					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358079660	MGP_WTSI_3_57378432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57481931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	156 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	133 bp proximal
Gm65379	predicted gene, 65379	1553 bp downstream
Rr577124	regulatory region 577124	1658 bp distal
Rr577125	regulatory region 577125	1308 bp proximal
Rr577126	regulatory region 577126	1970 bp proximal
Tssr33328	transcription start site region 33328	1250 bp downstream
Tssr33329	transcription start site region 33329	1334 bp downstream
Tssr33330	transcription start site region 33330	1345 bp downstream
Tssr33331	transcription start site region 33331	1397 bp downstream
Tssr33332	transcription start site region 33332	1928 bp downstream
Tssr33333	transcription start site region 33333	1937 bp downstream
Tssr33334	transcription start site region 33334	1945 bp downstream
Tssr33335	transcription start site region 33335	1975 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron