rs239808702 SNP Detail

Summary

• ID
  rs239808702
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCGCAA ACACAAGGGA
  GCCTCCAGTC TCCACCTCCC CCTGCTGGGA TCATCAGTGT GTGTGAGTGT GTACATGGGG
  AAGTGCCAGT GCATTGTGTG TGACTGTGTG TATGTGTGAG GAGTGTAGGT CTGTGTATTG
  GTATAAGTGT TTTTTGTGTG CATGTGTGTA ATATTTGACT GTGAGTTGTG AGATGGCGTG
  T
  ATGTGATGTG TGCATATAGA GAGATAGGTG TATGCATGTG TATGAGTCTG TGTGAGTGTG
  TGAATTTGTG TGTGCACATG AGTATTCAGA ATGTTTGTGT ATAAAGTAAG TGTATGTGAA
  TGTGTATGAG TGTGTGCATC TGTGTGTTTA TAATGTGTAC ATGTATGTGA GAATGTGTAT
  GAGAGTGTGT GCTCAAACTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028029	CHEV_3_151766725	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239808702					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1667 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			300 bp downstream
Rr587452	regulatory region 587452			1038 bp proximal
Rr587453	regulatory region 587453			1766 bp proximal
Rr587454	regulatory region 587454			1832 bp proximal