rs239781574 SNP Detail

Summary

• ID
  rs239781574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75845439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCTCCA TGTTCCAGGC
  AGAGGACCAT CCCAACCCTT CCCACCACAG TCTCTTTACA CAGGACTCTA CACGAGTGTC
  TTGCACCCAT GCCTGCCATC TTGGAGCCCA TGAGTTTGCA TGTTTTATAT CTTTTGAATA
  CTATTCTTTG CCCTTTTGCT ATGCCCCTGG AGGGTCATCT TAGCAAAACC AAACTGGATT
  W
  TTCCACTTTG TATTTCCAGC CATGTGATGC TGGCCTCTGC ATAGCAGAGA TTTCTGCCAG
  CTGCAGACCA CCTTACTTGC CACCTGTCCT CTCAGAACCT CATTATTGCA TTTTTTTCCC
  TGTTCTAAAC CCAAATGGCC TTTCTGGGAC AACCCTACTT GTCCCAAACA CTTTGCCTTA
  GGGACCAGAG TCACATCGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352393	CHEV_2_75853152	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239781574					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75845439 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1800 bp proximal