rs239766702 SNP Detail

Summary

• ID
  rs239766702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62539248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACCAGC CCACTTTTAT
  TTCTTATACA TAGGAATGGG GATCAGGAGT AGGGATGAAG GTAAAATATA TCCAGATTTG
  TGTAGTGTCC AAGATGGAGG GACCACACGA ATTGCCCTGA CTGTAAAAAA TACAGAGAAG
  ACCCTCTTTA GAATCTGGAG CTTAACTCTA TAGTGTATAG GTCACAGGCA GAGGCCCATT
  Y
  CCCCCCCACC CCCACCCCCC CCCCGGCACC TGCCTCCATC ACTGGGGACC CAGATGTTCT
  TTCTAACATT TTCCTGCACC GTTGACCTCA ATCTATGCTC CCTACTTTCC TGAAGTTAGT
  CCCTGTGGCA AGAACATTTA GATGTTTATA AACATAAGAC AGGGTGAGCG CCGGATAGGA
  GGTAATGAAA TCCCAGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142785	CHEV_4_62282045	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239766702					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62539248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rgs3	regulator of G-protein signaling 3			Intron
				Noncoding-Transcript-Variant
Rr593362	regulatory region 593362			1419 bp distal
Rr593363	regulatory region 593363			841 bp proximal
Tssr37501	transcription start site region 37501			1481 bp downstream
Tssr37502	transcription start site region 37502			1342 bp downstream
Tssr37503	transcription start site region 37503			1292 bp downstream
Tssr37504	transcription start site region 37504			1271 bp downstream