rs239731122 SNP Detail

Summary

• ID
  rs239731122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15167453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACATAA AGGCTGAGCT
  TAACTCCACC TTCTGGTAAT CAGGCACTGG ATGTGGAGAA TGTAGAAGCT GAGAGTTAGC
  TGGCCAGAAG GTCTACAAAA ATAATGAGAT TCAGGTCCAA CTGATTCTGT GTCTCAAGAG
  AATAAGAAGT CAGGGATCAA CAGAGAAAGA TACCTGAACT GCATCCATGT ATATGTGCAT
  K
  CACACAAGTA TGCTAGCACA GCCTAACTTC CTCATACAAG GAGAAAGAGA GAGAGAGACA
  GAGACAGAGA CAGAGGAAGA GAAAGGGGGA ATTAAATAAT AAAATAAAAT TAAGAGTGAG
  TGAAGTCCTT GTATAATACA TGAACACAAC CCACACTCAC ACACAAAGTA TAATACAATT
  CCGAAAGCAA AAATTAATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321751534	CHEV_6_15117454	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239731122					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15167453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626644	regulatory region 626644			806 bp distal