rs239709757 SNP Detail

Summary

• ID
  rs239709757
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73107638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGCGG GGAGTCTGCA
  GCGTGAGGTT CAGTGGCTTC TTCCTCTTTT CTCGGAGCTC TTCTTCCTCT AGTTTTCCTT
  CTCTTCGGTC ATTTTCTCTC CCGGCTCATC CATTTCTGCC TGGGACGCCC CGCACCCCCA
  GCCCCAAAGC GTCTTCGAGT TTGGGTCTGG TCTTAAGGAG AAGCTGTGGC AGAGTACGCT
  T
  ATCCTGGGGG TTTGAGGCAG AGGCTCTGAG GTCTATAGGG CGTCCCGTGC GTCTAGGGTC
  TGCAGGCTGG AGGTGCGGAG GTGAGTGCGA GCTGGGGGTT CCTGAGGAAT GAGGGCGCCG
  GGACGTCGGT CCCAGGCAGC TTTGTTTCTT GTTGATAATA AAGGCAGATC AAAGGGCCTG
  GCTGTGCAGG TCTCGCTCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344750	CHEV_2_73115351	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239709757					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73107638 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11769	CpG island 11769			within coordinates
Cpgi11770	CpG island 11770			1294 bp proximal
Rr406574	regulatory region 406574			110 bp distal
Rr559121	regulatory region 559121			within coordinates
Rr559122	regulatory region 559122			1270 bp proximal
Rr559123	regulatory region 559123			1352 bp proximal
Sp9	trans-acting transcription factor 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant