rs239663884 SNP Detail

Summary

• ID
  rs239663884
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75514238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGATTCCC ACCCTACAAT AAAGTTCTTC AGTAAACTGA
  GACCTTGGCA TATTATTGAA ATTAAAAATT GTATCTTTTT TTTTTTTTTT TTTTTTTTGG
  T
  TTTTTTTCGA GACAGGGTTT CTCTGTATAG ACCTGGCTGT CCTGGACCTC ACTTTGTAGA
  CCAGGCTGGC CTCGAACTCA GAAATCCACC TGCCTCTGA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss354505499	MGP_WTSI_2_75521951	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	FVB/NJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs239663884					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354505499	MGP_WTSI_2_75521951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75514238 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	within coordinates
Rr559543	regulatory region 559543	1689 bp distal
Rr559544	regulatory region 559544	1401 bp distal
Rr559545	regulatory region 559545	1197 bp distal
Rr559546	regulatory region 559546	138 bp distal
Rr559547	regulatory region 559547	766 bp proximal
Rr559548	regulatory region 559548	1494 bp proximal
Tssr18460	transcription start site region 18460	683 bp downstream
Tssr24652	transcription start site region 24652	1610 bp downstream