rs239650559 SNP Detail

Summary

• ID
  rs239650559
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAGACC AGGGTGGCCT
  CAAACTCAGA AATTCACCTG CCTCTGGCTC CCAAATTCTG GGATTAAAGG CGTGCACCAC
  CACTGCCCAG CTTGTATTTA TTGTCTTTGT AAGCTCTTAC ATAATGCAGG GTCTTTTGTA
  GCACAGGTCT CCTTGGCCTT TTGTAGACCG GGGGTGGGGG TGGGGGGAGG GTGGGGTGGG
  G
  TGGGGGGATA TATGAGACCT TGACTGACTG CTTGTCCTGT GCACAAGCTG GAGTGCTTAG
  ATTATACCCC TGTGCTATCA TTCTGGGCTC TTCAACTTTT AATCCTTTAC AAAAAATCAG
  TAGTTTATTT CTTTTCCGTT TATGTGCCTG TGTGTGACCC GATGAGCACA AGGTGCCCTC
  AGAGGCCTCT GCTACACGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	CE/J	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	ZALENDE/EiJ
ss363295775	MGP_WTSI_4_132072741	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	CE/J	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	ST/bJ	ZALENDE/EiJ
rs239650559					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363295775	MGP_WTSI_4_132072741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244137 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	747 bp downstream
Rr377207	regulatory region 377207	511 bp downstream
Rr600996	regulatory region 600996	1536 bp distal
Rr600997	regulatory region 600997	1875 bp distal
Rr600998	regulatory region 600998	798 bp distal
Rr600999	regulatory region 600999	948 bp proximal
Tssr39372	transcription start site region 39372	998 bp downstream
Tssr43681	transcription start site region 43681	1392 bp upstream