rs239648296 SNP Detail

Summary

• ID
  rs239648296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107183673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATGGTC AAACCAAGCG
  GTCTCAATTC AGTAACATTT TTACCACTTG AGACCACAGG GAGGCAGAGC TGATACTGTT
  CCCTTAGGCA TAGTGTTAGC TTTCTCTTAA GACAACTGGG GCAAACTTTA CTTTGAATAG
  TATCTAATAG GTTTTTAAAC ACCTAGCCCA GCCTCCCAAG TACTGGGATC ATCAGCATGC
  Y
  CTCTGCTACG CAGCTCTAAC GCTATCTTTT AAGGGTATCT CTAGAGTGCT GTTCTAAAAT
  CTGAATAGCC CACATTGTGT TACCTGATAA CTCAGGTAAT TTCTCCAAAG CCCAAATTAC
  ACCCCATAAA CTGGAATCCC AAGAAAGTTA GAATTCTAGA GCCAGGAGCT GGGGAGATGT
  CTTAGTCAGC ATTCTTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320865184	CHEV_3_107079275	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239648296					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107183673 () rs orientation: forward

Symbol	Name	Function Class
D3Tem1	DNA segment, Chr 3, Temple 1	1710 bp proximal
Rr582953	regulatory region 582953	130 bp distal